Tags

• yeast 17
• Bud23 8
• ribosome biogenesis 9
• rRNA methyltransferase 2
• Plasmodium falciparum 1
• malaria 1
• parasite 1
• snRNAs 1
• Trm112 2
• Las1 1
• Grc3 1
• Utp14 1
• Rps2 1
• Dhr1 5
• Ecm16 4
• Utp2 2
• Imp4 2
• SSU processome 4
• U3 snoRNA 2
• data 2
• heat shock 2
• aggregation 2
• food 2
• granola 1
• personal 4
• science 1
• journal club 7
• protein quality control 2
• public art 3
• mural 2
• recipe 2
• auxotrophic marker 1
• endocytosis 1
• genetic screen 1
• rapamycin 1
• ubiquitin 3
• murals 1
• Ithaca 1
• endo-lysosome 2
• Rsp5 3
• TORC1 1
• introns 1
• art 1
• DIY 1
• P values 1
• Statistical analysis 1
• Beeswarm plot 1
• multi-colored dot plot 1
• Superplot 1
• COVID-19 1
• social 1
• sanitation 1
• small ORFs 1
• non-canonical ORFs 1
• Ribosome Profiling 1
• microproteins 1
• HLA-I peptidomics 1
• uORFs 1
• lncRNA 1
• split-fluorescent protein 1
• Rcr1 1
• Rcr2 1
• Ubiquitin 1
• E3 ligase adaptors 1
• E3 ubiquitin ligase 1
• HECT 1
• membrane protein quality control 1
• Structuromics 3
• omics 2
• Mass spectrometry 1
• limited proteolysis 1
• LiP-MS 1
• structural barcodes 1
• Genetic Interaction mapping 1
• GI profile 1
• epistatic miniarray profile 1
• integrative modeling 1
• histones 1
• Electron microscopy 1
• cryo-ET 1
• RNA aptamers 1
• DNA origami 1
• LaTeX 1
• biologists 1
• typesetting 1
• new lab 3
• website 1
• jekyll 1
• github 1
• lab manual 2
• data management 1
• best practices 1
• scientific rigor 1
• labmanual 3
• wetlab 2
• meetings 1
• newstart 1

yeast

• Structuromics-Part 2
• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase adaptor, Rcr1
• Bud23 promotes the progression of the Small Subunit Processome to the pre-40S ribosome in Saccharomyces cerevisiae
• Introns and growth
• Rsp5 Ubiquitin ligase–mediated quality control system clears membrane proteins mistargeted to the vacuole membrane
• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway
• Translocon Declogger Ste24
• Disaggregation assay data visualization
• Aggregation assay data visualization
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16
• The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23
• Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae
• The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits
• Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

Bud23

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• Bud23 promotes the progression of the Small Subunit Processome to the pre-40S ribosome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16
• The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23
• The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits
• Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

ribosome biogenesis

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• Bud23 promotes the progression of the Small Subunit Processome to the pre-40S ribosome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16
• The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23
• Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae
• The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits
• Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

rRNA methyltransferase

• The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits
• Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

Plasmodium falciparum

• 5′ and 3′ end modifications of spliceosomal RNAs in Plasmodium falciparum

malaria

• 5′ and 3′ end modifications of spliceosomal RNAs in Plasmodium falciparum

parasite

• 5′ and 3′ end modifications of spliceosomal RNAs in Plasmodium falciparum

snRNAs

• 5′ and 3′ end modifications of spliceosomal RNAs in Plasmodium falciparum

Trm112

• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23
• The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits

Las1

• Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae

Grc3

• Las1 interacts with Grc3 polynucleotide kinase and is required for ribosome synthesis in Saccharomyces cerevisiae

Utp14

• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

Rps2

• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

Dhr1

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• Bud23 promotes the progression of the Small Subunit Processome to the pre-40S ribosome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

Ecm16

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• Physical and functional interaction between the methyltransferase Bud23 and the essential DEAH-box RNA helicase Ecm16
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

Utp2

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

Imp4

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• From knobs to a central pseudoknot: understanding 40S ribosomal subunit biogenesis through Bud23

SSU processome

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• Bud23 promotes the progression of the Small Subunit Processome to the pre-40S ribosome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot
• The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP

U3 snoRNA

• Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
• The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot

data

• Disaggregation assay data visualization
• Aggregation assay data visualization

heat shock

• Disaggregation assay data visualization
• Aggregation assay data visualization

aggregation

• Disaggregation assay data visualization
• Aggregation assay data visualization

food

• Recipe blog
• Featured on Traffic Light Cook

granola

• Featured on Traffic Light Cook

personal

• DIY Hairpin Leg sidetables
• Ithaca Murals
• Recipe blog
• Featured on Traffic Light Cook

science

• Translocon Declogger Ste24

journal club

• Structuromics-Part 3
• Structuromics-Part 2
• Structuromics-Part 1
• noncanonical ORF translation
• Representing reproducibility and variability
• Introns and growth
• Translocon Declogger Ste24

protein quality control

• Rsp5 Ubiquitin ligase–mediated quality control system clears membrane proteins mistargeted to the vacuole membrane
• Translocon Declogger Ste24

public art

• Ithaca Murals
• Public art- painting an outdoor electrical box
• Art in the Backyard- painting our backyard garden closet

mural

• Public art- painting an outdoor electrical box
• Art in the Backyard- painting our backyard garden closet

recipe

• WHO hand sanitizer spray recipe
• Recipe blog

auxotrophic marker

• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway

endocytosis

• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway

genetic screen

• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway

rapamycin

• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway

ubiquitin

• Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase adaptor, Rcr1
• Rsp5 Ubiquitin ligase–mediated quality control system clears membrane proteins mistargeted to the vacuole membrane
• Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway

murals

• Ithaca Murals

Ithaca

• Ithaca Murals

endo-lysosome

• Membrane protein quality control mechanisms in the Endo-Lysosome system
• Rsp5 Ubiquitin ligase–mediated quality control system clears membrane proteins mistargeted to the vacuole membrane

Rsp5

• Membrane protein quality control mechanisms in the Endo-Lysosome system
• Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase adaptor, Rcr1
• Rsp5 Ubiquitin ligase–mediated quality control system clears membrane proteins mistargeted to the vacuole membrane

TORC1

• Introns and growth

introns

• Introns and growth

art

• DIY Hairpin Leg sidetables

DIY

• DIY Hairpin Leg sidetables

P values

• Representing reproducibility and variability

Statistical analysis

• Representing reproducibility and variability

Beeswarm plot

• Representing reproducibility and variability

multi-colored dot plot

• Representing reproducibility and variability

Superplot

• Representing reproducibility and variability

COVID-19

• WHO hand sanitizer spray recipe

social

• WHO hand sanitizer spray recipe

sanitation

• WHO hand sanitizer spray recipe

small ORFs

• noncanonical ORF translation

non-canonical ORFs

• noncanonical ORF translation

Ribosome Profiling

• noncanonical ORF translation

microproteins

• noncanonical ORF translation

HLA-I peptidomics

• noncanonical ORF translation

uORFs

• noncanonical ORF translation

lncRNA

• noncanonical ORF translation

split-fluorescent protein

• noncanonical ORF translation

Rcr1

• Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase adaptor, Rcr1

Rcr2

• Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase adaptor, Rcr1

Ubiquitin

• Membrane protein quality control mechanisms in the Endo-Lysosome system

E3 ligase adaptors

• Membrane protein quality control mechanisms in the Endo-Lysosome system

E3 ubiquitin ligase

• Membrane protein quality control mechanisms in the Endo-Lysosome system

HECT

• Membrane protein quality control mechanisms in the Endo-Lysosome system

membrane protein quality control

• Membrane protein quality control mechanisms in the Endo-Lysosome system

Structuromics

• Structuromics-Part 3
• Structuromics-Part 2
• Structuromics-Part 1

omics

• Structuromics-Part 2
• Structuromics-Part 1

Mass spectrometry

• Structuromics-Part 1

limited proteolysis

• Structuromics-Part 1

LiP-MS

• Structuromics-Part 1

structural barcodes

• Structuromics-Part 1

Genetic Interaction mapping

• Structuromics-Part 2

GI profile

• Structuromics-Part 2

epistatic miniarray profile

• Structuromics-Part 2

integrative modeling

• Structuromics-Part 2

histones

• Structuromics-Part 2

Electron microscopy

• Structuromics-Part 3

cryo-ET

• Structuromics-Part 3

RNA aptamers

• Structuromics-Part 3

DNA origami

• Structuromics-Part 3

LaTeX

• LaTeX for Biologists

biologists

• LaTeX for Biologists

typesetting

• LaTeX for Biologists

new lab

• New student guide
• Data Management Planning
• Sardana Lab Website

website

• Sardana Lab Website

jekyll

• Sardana Lab Website

github

• Sardana Lab Website

lab manual

• New student guide
• Data Management Planning

data management

• Data Management Planning

best practices

• Data Management Planning

scientific rigor

• Data Management Planning

labmanual

• Lab jobs and ordering
• Meetings: Lab, subgroup, and 1-1
• Lab notebook guidelines

wetlab

• Lab jobs and ordering
• Lab notebook guidelines

meetings

• Meetings: Lab, subgroup, and 1-1

newstart

• Meetings: Lab, subgroup, and 1-1